BioMed Sample Sheets
stable

Overview

  • Introduction
  • High-Level Overview
  • Table Fields
  • JSON Sample Sheets
  • TSV Sample Sheets
  • Examples
  • Frequently Asked Questions

Schemas & Workflows

  • Workflow Assumptions
  • Entity Names
  • Matched Tumor Samples
  • Germline Variants Samples
  • Custom Fields in TSV Schemas
  • Generic Sample Sheets

API

  • Models
  • Shortcuts
  • Input/Output
  • TSV Input/Output
BioMed Sample Sheets
  • Docs »
  • Shortcuts
  • Edit on GitHub

Shortcuts¶

Contents

  • Shortcuts
    • biomedsheets.shortcuts.TestSampleChildShortcut
    • biomedsheets.shortcuts.NGSLibraryShortcut
    • biomedsheets.shortcuts.TestSampleShortcut
    • biomedsheets.shortcuts.GermlineCaseSheet
    • biomedsheets.shortcuts.CancerCaseSheet
    • biomedsheets.shortcuts.CancerDonor
    • biomedsheets.shortcuts.CancerMatchedSamplePair
    • biomedsheets.shortcuts.CancerBioSample
    • biomedsheets.shortcuts.SampleSheet

biomedsheets.shortcuts.TestSampleChildShortcut¶

biomedsheets.shortcuts.NGSLibraryShortcut¶

biomedsheets.shortcuts.TestSampleShortcut¶

biomedsheets.shortcuts.GermlineCaseSheet¶

biomedsheets.shortcuts.CancerCaseSheet¶

biomedsheets.shortcuts.CancerDonor¶

biomedsheets.shortcuts.CancerMatchedSamplePair¶

biomedsheets.shortcuts.CancerBioSample¶

biomedsheets.shortcuts.SampleSheet¶

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© Copyright 2017, Manuel Holtgrewe Revision 49f417b5.

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